DiffeoMap (previously known as Landmarker) User Manual

Sections

  1. Introduction

  2. hardware requirements

  3. Getting Started
    1. Step One: Linear Normalization

    2. Step One: Linear Normalization with Multiple Images

    3. Step One: Linear Normalization with Transformation Matrix (Transformation of a Tensor File)

    4. Step One: Recalculation of DTI Maps From a Normalized Tensor File

    5. Step Two: Nonlinear Normalization (example: FA + trace dual-contrast LDDMM)

    6. Step Two: Nonlinear Normalization (example: FA + b0 dual-contrast LDDMM)

    7. Step Three: Image Transformation for LDDMM

    8. Extra Feature: DTI Distortion Correction

    9. A Sample Pipeline of Dual Channel DTI (B0/FA) Normalization

    10. A Sample Pipeline of Dual Channel DTI (B0/FA) Normalization by Combining Matrice

    11. A Sample Pipeline of Dual Channel DTI (Trace/FA) Normalization by Combining Matrice

  4. Overview of LDDMM-based analysis for Atlas-based analysis (ABA) and voxel-based analysis (VBA)

DiffeoMap Tool Menu:

  1. Image: Viewing Images & Image Manipulation Operations

  2. Re-sampling data with the Command File

  3. Intensity Correction

  4. Landmark Menu

    1. Defining Landmarks

    2. Editing Landmarks

    3. Saving Landmarks

  5. Transformation Tools

    1. AIR Transformation Tools

    2. Landmark Based Transformation Tools

  6. Volume LDDMM & Remote Processing

  7. Multichannel Volume LDDMM

  8. Volume LDDMM & Remote Processing Through Linux

user manual/diffeomap (last edited 2018-08-21 18:59:08 by itsoacunetix)